This is a chronological list for every story arc in Housepets! that lasted three strips/pages or longer.
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Year One ("Housepets! Are Naked All The Time")
- "Imaginate"
- "The Game"
- "Cat Tail"
- "The Racoons"
- "The Adventures of Spot"
- "Fido's Return"
- "Mouse Mouse Revolution"
- "Thematic Arc of Questionable Quality"
- "The Zoo"
- "The Grove"
- "Housepets Christmas"
- "The Yarn Ball"
- "Further Adventures of Spot"
- "The Vet"
- "A Mouse Named Spo"
- "Zap!"
- "Fall of the Pridelands"
- "The Continuing Adventures of Spot"
- "A Sinister Shadow"
Year Two ("Housepets! Hope They Don't Get Eaten")
- "Roadtrip Woo"
- "Down At The Farm"
- "Money Sharks"
- "n-ple Date"
- "The Uncanny Adventures of Spot"
- "The Visitor"
- "Oops I Arced"
- "It's A Wonderful Dog's Life"
- "Ocean's Two"
- "Imaginate, Too!"
- "The Present"
Year Three ("Housepets! Can Be Real Ladykillers")
- "Spot McCloud Presents Comics"
- "Dog Days of Summer"
- "Theme Park World"
- "The Adventures of Stripe"
- "Movie Night"
- "Scaredy Cats"
- "Noob Tube"
- "Hope of the Pridelands"
- "We're Snowed In!"
- "The Preeminent Adventures of Spot"
- "The Arc Specifically About Being Naked"
- "Not All Dogs
Year Four ("Housepets! Are Gonna Sniff Everybody")
- "The Great Water Balloon War"
- "Let's Imaginate Macbeth!"
- "The Interview"
- "The Case of the Aztec Gold"
- "A Respite In The Country"
- "Spots and Stripes"
- "A Holiday at the Zoo"
- "Housepets Babies!"
- "Show Business"
- "What Money Buys"
- "The Mall"
- "The Critical Review of Spot"
- "The Trial in Heaven"
Year Five ("Housepets! Don't Criticize Your Lovelife")
- "Let's Imaginate Guys and Dolls!"
- "Testing Grounds"
- "Taking Cover"
- "PsyCon"
- "Getting Phisical"
- "PsyCon 2: PsyConner"
- "The Retroactively Continuous Adventures of Spot"
- "Temple Crashers"
- "All Hallow's Ween"
- "The Unbearable Lightness of Being A Dog"
- "One Cat's Treasure"
- "Love And War"
- "Jack Of One Trade"
- "The King and I"
Year Six ("Housepets! Will Do It For Free")
- "Mice To Meet You"
- "THE GALLIFRAX PROTOCOL"
- "Jungle Fever"
- "Yes, Jessica, There Is An Opener Of Ways"
- "Let's Imaginate And Then There Were None!"
- "What's The Story?"
- "Tiger's Very Own Super Special Television Show!"
- "Heaven's Not Enough"
Year Seven ("Housepets! Don't Ask Questions")
- "The Interlude of Spot"
- "Heaven's Not Enough, Part 2"
- "The Ineptitude of Spot"
- "Heaven's Not Enough, Part 3"
- "I Need A Vacation"
- "All Hallow's Ween: Resurrection"
- "Rabbit's Foot"
- "Pageantate!"
- "Maternal Instinct"
- "Wolf's Clothing"
- "Ea(s)ter"
- "The Future of Tomorrow, Today!"
- "All's Fair, Part 1"
Year Eight ("Housepets! Let Instincts Do Their Thing")
- "The Plot Against Spot"
- "All's Fair, Part 2"
- "Housepets 5000 BC, Part 1"
- "Housepets 5000 BC, Part 2"
- "Housepets 5000 BC, Part 3"
- "Special Delivery"
- "The Spot-tacular Spot"
- "Flip That Den!"
- "Fort Pillow"
- "The 4 Animals You Meet In Heaven"
Year Nine ("Housepets! Don't Know How Stuff Works")
- "Puppy Power"
- "Real Stories of the K9PD"
- "Snow Joke"
- "Save the Date, Part 1"
- "Save the Date, Part 2"
- "Temple Crashers 2: Temple Crashers"
Year Ten ("Housepets! Can't Always Get What They Want")
- "Temple Crashers 2: Temple Crashers, Part 2"
- "Temple Crashers 2: 2 Temple 2 Crashers"
- "Temple Crashers 2: Temple Crasherser"
- "Temple Crashers 2: Temple Crash"
- "Temple Crashers 2: First Blood Part 6"
- "Temple Crashers 2: Oops"
- "Temple Crashers 2: Final Crashers"
- "Temple Crashers 2: Epilogue Crashers"
Year Eleven ("Housepets! Feel Strangely Exotic")
- "Call o' th' Wild"
- "Directed To Video"
- "The Hot Springs Episode"
- "Hot Springs Encore"
- "The Maxwell Thing"
- "Hearts and Minds"
- "No Time For Hot Springs!"
- My Life As A Teenage Squirrel
- "My Life As A Teenage Squirrel"
Year Twelve ("Housepets! Rock The Bottomless Look")
- "My Life As A Teenage Squirrel, Part 2"
- "My Life As A Teenage Squirrel, Part 3"
- "My Life As A Teenage Squirrel, Part 4"
- "My Life As A Teenage Squirrel, Part 5"
- "Be Mine"
- "The Identity Of Spot"
- "Let's Imaginate Jurassic Park!"
Year Thirteen ("Housepets! Want To Speak To Management")
- "Let's Imaginate Jurassic Park! Part 2"
- "Spo's Return"
- "HECKRAISER, Part 1"
- "Heavendropper"
- "HECKRAISER, Part 2"
- "HECKRAISER, Part 3"
- "HECKRAISER, Part 4"
Years Fourteen and Fifteen ("Housepets! Were Left Unsupervised")
- "HECKRAISER REVELATIONS"